@hypolite No, they're just a corporation, pro-money. I'm not aware of any history of activism.
I don't think this was a statement, just unawareness of international sensitivities. If they knew this would happen when they made the game, they probably would have checked more carefully how international teams represent themselves.
Now I'm slightly curious how closely other Konami sports products have followed issues like "FYROM", "Chinese Taipei", teams using the olympic flag for team flag, etc. But not curious enough to look it up.